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Colloquia and talks

Date

Name

Institution / Company

Subject

01/23/2012 Dr. Julia Engelmann

Department of Statistical Bioinformatics, Institute for Functional Genomics, Regensburg

Predicting causal effects of stromal cell signals on hepatic cancer cells
01/23/2012 Dr. Christof Winter

Translational Oncogenomics Lab, Lund University, Schweden

How structural protein interactions and regulatory networks predict drug
targets and survival in pancreatic cancer
01/23/2012 Dr. Nicholas Furnham

European Bioinformatics Institute, Cambridge

Exploring the evolution of nevel protein functions within structurally
defined superfamilies
01/23/2012 Dr. Mareike Fischer

Center for Integrative Bioinformatics, Wien

Maximum Parsimony - new insights into an old method
01/23/2012 Dr. Barbara Hutter

Computational Oncology-Gruppe, German Cancer Reasearch Center, Heidelberg

Analysis of new generation sequencing data in computational oncology
01/23/2012 Dr. Dominic Rose

Chair for Bioinformatics, Universität Freiburg

Computational biology of non-coding RNAs
11/25/2009 Herrn Dr. Hauke Busch Freiburg Institute for Advanced Studies Using Time-Scale Separation of cellular processes to untangle biological complexity
10/28/2009 Dr. Jürgen Pahle University of Manchester How to quantify information transfer in signaling systems
06/24/2009 Prof. Eugene Myers Howard Hughes Medical Institute (HHMI),
Janelia Farms Research Campus, USA
Machine-Vision and Molecular Biology
06/24/2009 Dr. Christoph Bock Max-Planck Institute for Computer Science Epigenome analysis with bioinformatic methods and applications to cancer biomarker discovery
05/27/2009 Dr. Alice McHardy Max-Planck Institute for Computer Science Computational Methods for the Analysis of Metagenome Sequence Samples
05/06/2009 Dr. Mario Albrecht Max-Planck Institute for Computer Science Utilizing Network Data for Biological Research
06/05/2008 Ritchie, Dave University of Aberdeen Protein Docking and Molecular Shape Recognition using Polar Fourier Correlations
21/01/2008 Prof. Rolf Backofen Freiburg University, Chair for Bioinformatics Translational Control: Non-Coding RNAs and Alternative Splicing
24/10/2007 Prof. Gyan Bhanot

BioMaPS Institute and Biomedical Engineering, Rutgers University & Cancer Institute of New Jersey

What PCA and Consensus Ensemble Clustering reveal about Human Migrations
and Breast Cancer

 

14/06/2007 Park, Youngki Universität des Saarlandes

What do membrane protein structures tell us about their folding and thermodynamic stability?

21/05/2007

Prof. Gregory Stephanopoulos

Massachusetts Institute of Technology (MIT) Laboratory for Metabolic Engineering and Bioinformatics, Chemical Engineering Department

Metabolic and Cell Engineering: Past Accomplishments and Potential in the Post Genomic Era

03/05/2007 Finn, Robert

 

Pfam and iPfam

22/02/2007

Weichenberger, Christian

Universität Salzburg

Self-consistent Assignment of Asparagine and Glutamine Side-Chain Amide Rotamers

14/02/2007 Thomas, Roman MPI für Neurologische Forschung, Köln Translating cancer genomics into medicine

01/02/2007

Weskamp, Nils

Universität Marburg

Structure-based Mapping of Protein Binding Pocket Space

17/01/2006 Bozek, Kazia

 

Modeling of Heterogenous Regulation in Bilogical Networks

19/12/2006

Fröhler,  Sebastian

 

Logic- Based Information Integration and Machine Learning for Gene Regulation Prediction

14/12/2006 Prof. Karin Hauser Institut für Biophysik, Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt Proteins Studied by Electrostatic Calculations

07/12/2006

Zacharias, Martin

International University Bremen

Computer simulation of biomolecules: The role of flexibility during molecular recognition

30/11/2006

Prof. Dr. Andreas Burkovski Mikrobiologie, Universität Erlangen Stickstoffkontrolle bei Corynebakterien

28/11/2006

Carlberg, Carsten

 

Bioinformatics and Systems Biology of Nuclear Receptor Signaling

03/11/2006

Bahadur, Ranjit Institut de Biochimie et Biophysique Moléculaire et Cellulaire

 

Structural features of protein-protein recognition

02/11/2006

Parthiban, Vijaya

Universität Köln

Factors Determining Protein Mutant Stability: Analysis and Application to Prediction

25/10/2006 Neduva, Victor EMBL Heidelberg

 

Predicting molecular details for protein interaction networks

18/10/2006

Dr. Christoph Wittmann

Technische Biochemie, Universität des Saarlandes

From Microorganisms to Cell Factories - Systems Biotechnology for Design and Optimization of Production Strains

10/10/2006

Schwede, Torsten

Universität Basel

SWISS- MODEL Server and Repository: Practical applications of automated large- scale comparative protein structure modeling

19/07/2006

Dr. Andreas Tholey

Technische Biochemie - Functional Proteomics Group, Universität des Saarlandes

Mass Spectrometry in Functional Protein Analytics Basics and Applications in Biotechnology and Medicine

20/06/2006

Dr. Tjerk P. Straatsma

Environmental Molecular Sciences Laboratory, Pacific Nothwest National Laboratory, Richland Washington

Scalable MD

18/05/2006

Dr. Armin Ehrenreich

Institut für Mikrobiologie und Genetik, Universität Göttingen

Funktionelle Genomik biotechnologisch relevanter Organismen: Der Exoenzym-Produzent Bacillus licheniformis und das Essigsäure-Bakterium Gluconobacter oxydans

18/05/2006

Schulz, Wolfgang Heinrich-Heine-Universität Düsseldorf Epigenetics in Prostate Cancer

16/05/2006

Emig, Dorothea

 

DiAlign-T: Multiple Sequence Alignment

11/05/2006

Dr. Peter Kolb

Dept. of Biochemistry, University of Zurich

 

Fragment-Based High Throughput Docking: Methodological Developments and Applications

11/05/2006

Prof. Dr. An-Ping Zeng

TU Hamburg

Integrated Analysis of Genome-Wide Metabolic and Regulatory Networks and Functional Genomic Data

09/05/2006 Chen, Brian Rice University, Houston Texas Algorithms for Protein Function Prediction

20/04/2006

Prof. Dr. Pavel Jungwirth

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague

Solvation of Ions at Aequeous Interfaces

07/04/2006

Revesz, Peter   New Algorithms for the Genome Map Assembmly Problem

20/03/2006

Cline, Melissa

 

Visualizing the effects of alternative splicing on protein interaction networks

02/03/2006

Michael S. Roberts

University of Queensland, Australia

Maximum Flux - A Concept to Predict Skin Permeation

02/03/2006

John Pugh

University of Cardiff, UK

Choosing the Right Predictors for Skin Permeation

08/02/2006

Prof. Helmut Grubmüller

Max-Planck-Institute for Biophysical Chemistry, Göttingen

Force probe molecular dynamics of titin activation and bacteriorhodopsin extraction

19/01/2006    

Prof. Reinhard Krämer

Institut für Biochemie, Univ. Köln

Aminosäureexkretion und -aufnahme in Corynebacterium. glutamicum

19/12/2005

Prof.Dr.Armen Mulkidjanian

Fachbereich Physik, Universität Osnabrück und dem Belozersky Institut für Physiko-Chemische Biologie der Lomonossov-Universität Moskau

Layering of surface water: Implications for physical and biological systems

15/12/2005

Dr. Matthias Schneider

Universität Augsburg

Mechanically Activated Proteins in Acoustically Driven Microfluidic Systems

15/12/2005

Dr. Martin Ginkel

Max-Planck-Institute for Dynamics of Complex Technical Systems in Magdeburg

Modeling cellular systems with ProMoT/Diva

01/12/2005

Prof. Thomas Noll

Institut für Biotechnologie, Univ. Bielefeld

Auf dem Weg zur rationalen Bioprozessentwicklung mit Säugerzellen: von der Glukose-limitierten Perfusionskultur bis zur Stoffflussanalytik

01/12/2005

Dr. Silvio Tosatto

Biocomputing GRUP, CRIBI Biotechnology Centry, University of Padua, Italy

Towards the reliable identification of accurate protein structures

30/11/2005

Dr. Dirk Walther

Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam

Non-Invasive Discrimination of Rejection in Heart Transplant Recipients using Gene Expression Profiling

22/11/2005

Dr. Benno Schwikowski

Research on Systems Biology, Institut Pasteur, Paris

Analyzing heterogeneous large data sets in molecular biology: Approaches to data integration and the

06/10/2005

Prof. Warren Hunt

Department of Computer Sciences, Universität Texas

Phylogenetic Conensus Analysis

08/09/2005

Dr. Bert de Groot

MPI für biophys. Chemie, Computational Biomolecular Dynamics Group, Götttingen

Model bias in NMR structure ensembles - a minimal force field approach for NOE based structure determination

24/08/2005

Prof. Jung-Hsin Lin

School of Pharmacy, National Taiwan University

Dynamics, Conformational Transition and Drug Interactions of P-glycoprotein upon ATP binding

11/07/2005

Dr. Arief Budi Witarto

Research Center for Biotechnology, Indonesian Institute of Science

Protein Engineering of Beta-Propeller Proteins

08/07/2005

Prof. Ulrich Baumann

Department of Chemistry & Biochemistry, University of Berne, Switzerland

The Birth and Death of Proteins: Structural Aspects of Translation Initiation and Protein Degradation

30/06/2005 

Prof. Dr. Helmut Schwab

Institut für Molekulare Biotechnologie, TU Graz

Improving and inverting enantioselectivity of an esterase by enzyme engineering

23/06/2005    

Dr. Jean-Marc Strub

Laboratoire de Spectrometrie de Masse Bio-Organique, ECPM Strasbourg, France

Proteomic Approaches in Biotechnological and Pharmaceutical Research

16/06/2005   

Prof. Dr. Christoph Syldatk

Technische Biologie, Universität Karlsruhe

Enzymatische Synthese nichtproteinogener D- und L-Aminosäuren ausgehend von D,L-monosubstituierten Hydantoinen

15/06/2005

Weiler, Gabriele

 

Computing complete gene structures

09/06/2005

Eggle, Daniela

 

Genome- wide analysis of growth- phase dependent genes in Stretomyces coelicolor

09/06/2005 

PhD Dr. Ursula Rinas

Gesellschaft für Biotechnologische Forschung, Braunschweig

Modern 'omics meets old-fashioned cell physiology - tools to understand protein producing E. coli cells

08/06/2005

Daniele Narzi

University of Rome

Molecular Dynamics Simulations of Protein Folding

31/05/2005

Charissi, Anna

 

Pattern Recognition: OCR of Handwritten Characters

27/04/2005

Pal, Csaba

EMBL Heidelberg

Adaptive evolution of metabolic networks

14/04/2005

Georgii, Elisabeth

 

Quantitative association rules for biological data

04/03/2005

Antezana, Erick

 

The aMAZE LightBench: a web interface to a relational database of cellular processes

03/03/2005

Yalak, Garif

 

Analysis of mutations in the death domains, death effector domains, caspase recruitment domains, and pyrin domains

02/03/2005

Prof. Dr. Gene Myers

Faculty of Computer Science, University of California, Berkeley

Whole Genome Sequencing, Comparative Genomics, and Systems Biology

02/03/2005

Dr. Dirk Schneider

Institut für Biochemie und Molekularbiologie, Universität Freiburg

Specificity and promiscuity in transmembrane helix interactions

02/02/2005

Prof. John Pugh

Cardiff University

Modelling enhancement of skin absorption. Comparison of model and non-model based predictions.

02/02/2005

Sotriffer, Christoph

Universität Marburg

Simultaneous docking to multiple targets and derivation of novel scoring functions

13/01/2005 

Dr. Ralf Krüger

Zentrale Spektroskopie, Deutsches Krebs-forschungszentrum (DKFZ), Heidelberg

Element-Massenspektrometrie von Phosphoproteinen mit LC-ICP-MS und Laserablations-ICP-MS

02/12/2004  

Michael Bannwarth

Institut für organische Chemie und Biochemie,

Universität Freiburg

Kristallstruktur der Pyranose 2-Oxidase aus dem Weißfäulepilz Peniophora sp.

24/11/2004

Prof. Dr. Jörn Walter

Lehrstuhl für Genetik, UdS

Epigenetics and epigenomics - coding and decoding of genetic information

18/11/2004

Prof. Dr. Roland Ulber

Bioverfahrenstechnik, Universität Kaiserslautern

Isolierung mariner Enzyme zum Einsatz in Biotransformation und Bioanalyse

17/11/2004

Prof.Dr.Axel Scheidig

Zentrum für Bioinformatik, UdS

Structure based ligand design - a case study on the DNA methyltransferase MTaqI

11/11/2004

Dr. Lenne, Pierre-Francois

Institut Fresnel, Marseille, Frankreich

Dynamic Molecular Confinement in Living Cell Membranes

10/11/2004

Zang, Klaus

Universtät des Saarlandes

Das Meningeom: Ein zytogenisches Modell für klonale Entwicklungen in Tumoren des Menschen

17/09/2004

Dr. Christian Freud

Forschungszentrum für molekulare Pharmakologie, FU Berlin

Recognition of proline-rich sequences by the GYF domain

28/07/2004

Prof. Rolf Müller

Pharmaz. Biotechnologie, UdS

The Impact of Bacterial Genomics on Natural Product Research - Myxobacteria as Metabolite Factories

22/07/2004

Apaydin, Serkan

Stanford University

Stochachstic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion

21/07/2004

Cecherini-Silberstein, Francesca

University of Rome

Identification and Characterization of the Minimal Cornserved Structure of HIV-1 Protease and Reverse Transcriptase in the Presence and Absence of Drug Pressure

15/07/2004

Heisig, Michael

Universität Heidelberg

Modellierung und Simulation der Diffusion von Xenobiotica durch das Stratum corneum

14/07/2004 Huber, Christian Universität des Saarlandes Flüssigchromatographie-Massenspektrometrie: Herausforderungen an die Datengenerierung und Evaluierung in der Proteomik und Genomik
13/07/2004 Huber, Wolfgang DKFZ Heidelberg Interfering with proteins - statistical challenges of functional cellular assays

07/07/2004

Lill, Markus Biographics Lab. 3R, Basel Multidimensional QSAR in Drug Design and Environmental Toxicology
07/07/2004 Freudenberg, Jan Inst. Humangenetik, Bonn Systematic Investigation of Genetic Variability in the Human Genome - Implications for Disease
05/07/2004 Hildebrandt, Andreas Zentrum für Bioinformatik, UdS Improving Solvation Calculations Using Nonlocal Electrostatics
05/07/2004 Geyer, Tihamer Zentrum für Bioinformatik, UdS Interfacing Brownian Dynamics -- A Step towards the "Virtual Bio-Lab"
05/07/2004 Böckmann, Rainer Dept. of Biochemistry, University of Zurich A theoretical Investigation of Membrane Proteins and their Environment

24/06/2004

Dr. Klaus Dreisewerd Universität Münster Prozesse und Potentiale der MALDI-MS mit gepulsten Infrarot-Lasern
27/05/2004 Meiler, Jens University of Washington De Novo Protein Stucture Prediction
25/05/2004 Beissbarth, Tim Wehi Bioinf. Parkville, Austr. Making Sense of Large Biological Datasets
24/05/2004 Beissbarth, Tim Wehi Bioinf. Parkville, Austr. Issues about SAGE: Sequencing Error Correction and Gene Identification
14/05/2004 Wen-Guey Wu Tsing Hua University, Taiwan How Protein-carbohydrate Interactions Promote Protein-lipid Interaction: A Lesson from Snake Venom Research
11/05/2004 Tsuda, Koji Universität Tübingen Learning Kernels from Biological Networks by Maximizing Entropy
27/04/2004 Wingender, Edgar Universität Göttingen Integrative Modeling of and Predictions on Regulatory Networks
15/03/2004 Thiele, Herbert Fa. Bruker, Hamburg Bioinformatik und Massenspektrometrie in der Proteomik
18/02/2004 Vert, Jean Philippe Ecole des Mines, Paris Extracting pathways activity from gene expression data
17/02/2004 Selbig, Joachim MPI Golm Mutual Information-based Bioinformatics Approaches
18/12/2003 Rahmann, Sven MPI Molecular Genetics, Berlin Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology
17/12/2003 Krause, Roland Cellzome AG, Heidelberg Bioinformatic Analysis of Protein Complexes in Saccharomyces Cerevisae for the Identification of Medical Drug Targets
17/12/2003 Rehmsmeier, Marc Bioinf. School Bielefeld Genome-Wide Prediction of Polycomb/Trithorax; Response Elements in Drosophila Melanogaster
16/12/2003 Prlic, Andreas Universität Salzburg Prospects and Challenges of Protein Structure Bioinformatics
10/12/2003 Beerenwinkel, Niko MPI Informatik Computational Methods for the Analysis of HIV Drug Resistance Data
10/12/2003 Winn, Peter EMBL Heidelberg Structure Function Relationships in Cytochromes P450 and the Ubiquitination Pathway

26/11/2003 

Prof. Andreas Gombert University of Sao Paulo, Brasilien; University of Minho, Braga, Portuga The Yeast Kluyveromyces marxianus as a Cell Factory

23/10/2003

Prof. Dr. Georg Sprenger Institut für Mikrobiologie der Universität
Stuttgart
Metabolic engineering mit Escherichia coli: Gewinnung von L-Phenylalanin und anderen Chorismat-Derivaten
08/10/2003 Heil, Burkhard Universität Bonn Bioinformatical recognition of Potassium-channel sequences
26/09/2003 Dunbrack, Roland Inst. F. Cancer Res. Philadelphia Improving comparative modeling: benchmarks, algorithms and scoring functions
11/09/2003 Weskamp, Nils Universität Marburg Efficient Similarity Search in Protein Structure Databases: Improving Clique-Detection through Clique Hashing
31/07/2003 Gösling, Astrid    
30/07/2003 Koch, Kerstin   Statistical analysis of amino acid side chain flexibility for 1:n protein protein docking
22/07/2003 Ben-Hur, Asa Stanford University Remote Homology Detection: A Motif Based Approach
17/07/2003 von Öhsen, Nik FhG-Scai Protein Structure Prediction: Improving Domain Identification within the ARBY Server
16/07/2003 Prof. Dr. Wolf-Dieter Lehmann Zentrale Spektroskopie, DFKZ, Heidelberg The Use of Accurate Mass Data for Peptide Sequencing and Recognition of Covalently Modified Peptides by Mass Spectrometry
15/07/2003 Weigand, Stephan Bayer AG, Abt. Pharma Kombinatorische Chemie in der Pharma Forschung: Wunsch und Wirklichkeit
08/07/2003 Konermann, Lars Univ. of Western Ontario Protein Folding and Conformational Dynamichs: What Can Mass Spectrometry Experiments Tell Us?
18/06/2003 Kececioglu, John University of Arizona Reconstructing a history of recombinations from a set of sequences
18/06/2003 Steck, Harald MIT Recovery of Regulatory Networks from High-Throughput data
12/06/2003 Zimmermann, Marc FhG-Scai Extracting knowledge from High-Throughput Screening Data: Towards the Generation of Biosphere Models
04/06/2003 Elofsson, Arne Stockholm Bioinformatics Center Improved automatic fold recognition using pcons, proq and pmodeller
02/06/2003 Gastreich, Markus BiosolveIT -
22/05/2003 Walter, Hauke University of Erlangen HIV drug resistance and viral fitness
08/05/2003 Tramontano, Anna University of Rome Hepatitis C Virus Proteins as Targets for Drug Development: The role of Bioinformatics and Modelling
28/04/2003 Claussen, Holger BiosolveIT Protein Flexibility and Database Interface - current developments around FlexX
07/04/2003 Yeang, Chen-Hsiang MIT Physical Network Models and Multi-source Data integration
12/02/2003 Lin, Chi-Jen University of Taiwan Can SVM be a major classification method? Recent research on SVM model selection
11/02/2003 Lin, Chi-Jen University of Taiwan Can SVM be a major classification method? Recent research on SVM model selection
14/11/2002 Stahl, Martin Hoffmann-La Roche Docking and De Novo Design: How Good are our Predictions?
31/10/2002 Kneuer, Carsten Universität Leipzig Organic anion transporting Polypeptides - Biopharmazeutisch relevante Transportproteine
30/10/2002 Fuhr, Günter R. IMBT St. Ingbert Offene Fragen der Zellbiologie mit Bezug zur Biotechnologie